class HTS::Faidx

• HTS::Faidx
• Reference
• Object

Defined in:

hts/faidx.cr

Constructors

• .new(file_name : Path | String, *, format : Symbol = :auto, auto_build : Bool = true)

Class Method Summary

• .build_index(file_name : Path | String, fai_path : String | Nil = nil, gzi_path : String | Nil = nil)
• .open(file_name : Path | String, *, format : Symbol = :auto, auto_build : Bool = true)
• .open(file_name : Path | String, *, format : Symbol = :auto, auto_build : Bool = true, &)

Instance Method Summary

• #build_index(fai_path : String | Nil = nil, gzi_path : String | Nil = nil)
• #close
• #closed? : Bool
• #fetch_qual(name : String | Symbol, start : Int, stop : Int)
• #fetch_qual(name : String | Symbol)
• #fetch_seq(name : String | Symbol, start : Int, stop : Int)
• #fetch_seq(name : String | Symbol)
• #file_name : String
• #finalize
• #format : Symbol
• #has_seq?(name : String | Symbol)
• #length
• #names
• #seq_len(name : String | Symbol)
• #size
• #to_unsafe : HTS::LibHTS::FaidxT

Constructor Detail

Class Method Detail

Instance Method Detail