class HTS::Bgzf

• HTS::Bgzf
• HTS::Hts
• Reference
• Object

Direct Known Subclasses

• HTS::Tabix

Defined in:

hts/bgzf.cr

Constructors

• .new(file_name : Path | String, mode = "r", threads = 0)

Class Method Summary

• .open(file_name : Path | String, mode = "r", threads = 0)
• .open(file_name : Path | String, mode = "r", threads = 0, &)

Instance Method Summary

• #<<(data) : self
• #bgzf? : Bool
• #compression_level : Int32
• #each_char(&)
• #each_line(delimiter = '\n', &)
• #each_line_view(delimiter = '\n', & : Bytes -> ) : self

  The borrowed line is valid only during the block.

  EXPERIMENTAL

• #file_name : Path | String
• #finalize
• #flush : Int32
• #getc : Char | Nil
• #gets(delimiter = '\n') : String | Nil
• #is_bgzf? : Bool

  ameba:disable Naming/PredicateName

• #mode : String
• #print(data : String) : Nil
• #print(data : Bytes) : Nil
• #print(data) : Nil
• #print(*objects) : Nil
• #puts(data : String) : Int64
• #puts : Int64
• #puts(*objects) : Nil
• #read(size : Int32) : Bytes
• #seek(offset)

  Override seek and tell for BGZF-specific behavior

• #tell
• #write(data : String) : Int64
• #write(data : Bytes) : Int64

Constructor Detail

Class Method Detail

Instance Method Detail