class HTS::Bcf::Format

• HTS::Bcf::Format
• Reference
• Object

Defined in:

hts/bcf/format.cr

Constructors

• .new(record : Bcf::Record)
• .new(record : Bcf::Record::AccessorContext)

Instance Method Summary

• #delete(tag : String) : Bool
• #each_genotype(tag : String = "GT", & : Int32, GenotypeView -> ) : Bool

  Yields each sample index and a borrowed view of its encoded GT values.

  EXPERIMENTAL

• #each_scalar_f32(tag : String, & : Int32, Float32 -> ) : Bool

  EXPERIMENTAL

• #each_scalar_i32(tag : String, & : Int32, Int32 -> ) : Bool

  EXPERIMENTAL

• #each_string_view(tag : String, & : Int32, Bytes -> ) : Bool

  EXPERIMENTAL

• #each_vector_f32(tag : String, & : Int32, Slice(Float32) -> ) : Bool

  EXPERIMENTAL

• #each_vector_i32(tag : String, & : Int32, Slice(Int32) -> ) : Bool

  EXPERIMENTAL

• #genotype_at(tag : String, sample_index : Int, & : GenotypeView -> ) : Bool

  Yields a borrowed GT view for one sample without traversing other samples.

  EXPERIMENTAL

• #genotypes : Array(Int32) | Nil
• #get_float(tag) : Array(Float32) | Nil
• #get_genotypes : Array(Int32) | Nil

  ameba:disable Naming/AccessorMethodName

• #get_int(tag) : Array(Int32) | Nil
• #get_string(tag) : Array(String) | Nil

  Returns one String per sample.

• #update_float(tag : String, value : Number)
• #update_float(tag : String, values : Array(Float32))
• #update_genotypes(values : Array(Int32))
• #update_int(tag : String, value : Int)
• #update_int(tag : String, values : Array(Int32))
• #update_string(tag : String, value : String)
• #update_string(tag : String, values : Array(String))
• #with_f32_buffer(tag : String, & : Slice(Float32) -> ) : Bool

  Yields a borrowed view of the raw Float32 FORMAT values.

  EXPERIMENTAL

• #with_i32_buffer(tag : String, & : Slice(Int32) -> ) : Bool

  Yields a borrowed view of the raw Int32 FORMAT values.

  EXPERIMENTAL

Constructor Detail

Instance Method Detail