struct HTS::Bam::Pileup::Column

• HTS::Bam::Pileup::Column
• Struct
• Value
• Object

Overview

Represents a pileup column at a genomic position

Defined in:

hts/bam/pileup.cr

Constructors

• .new(tid : Int32, pos : Int64, alignments : Array(Alignment), header : Bam::Header)

Instance Method Summary

• #alignments : Array(Alignment)
• #chrom : String

  Reference (chromosome) name for this position Returns empty string if tid is -1 (unmapped)

• #depth : Int32

  Depth equals number of alignments covering this position

• #pos : Int64
• #tid : Int32

Constructor Detail

Instance Method Detail