class HTS::Bam::Mpileup

• HTS::Bam::Mpileup
• Reference
• Object

Overview

High-level mpileup iterator over multiple BAM/CRAM inputs. Yields an Array of Pileup::Column (one per input) for each position.

Included Modules

• Enumerable(Array(HTS::Bam::Pileup::Column))

Defined in:

hts/bam/mpileup.cr

Constructors

• .new(inputs : Array(Bam), maxcnt : Int32 | Nil = nil, overlaps : Bool = false)

  Minimal constructor: accept Array(Bam).

Class Method Summary

• .open(inputs : Array(Bam), maxcnt : Int32 | Nil = nil, overlaps : Bool = false, &)

  Open an Mpileup iterator with block (RAII style)

Instance Method Summary

• #close : Nil
• #each(&block : Array(HTS::Bam::Pileup::Column) -> ) : Nil

  Iterate and yield per-position columns array (aligned by tid,pos across inputs)

• #finalize

Constructor Detail

Class Method Detail

Instance Method Detail