class HTS::Bam::Flag

• HTS::Bam::Flag
• Reference
• Object

Defined in:

Constant Summary

DUP = new(LibHTS2::BAM_FDUP.to_u16)

MREVERSE = new(LibHTS2::BAM_FMREVERSE.to_u16)

MUNMAP = new(LibHTS2::BAM_FMUNMAP.to_u16)

NONE = new(0_u16)

Named FLAG bit constants, as Flag values so they compose with #|. e.g. Bam::Flag::UNMAP | Bam::Flag::SECONDARY | Bam::Flag::DUP

PAIRED = new(LibHTS2::BAM_FPAIRED.to_u16)

PROPER_PAIR = new(LibHTS2::BAM_FPROPER_PAIR.to_u16)

QCFAIL = new(LibHTS2::BAM_FQCFAIL.to_u16)

READ1 = new(LibHTS2::BAM_FREAD1.to_u16)

READ2 = new(LibHTS2::BAM_FREAD2.to_u16)

REVERSE = new(LibHTS2::BAM_FREVERSE.to_u16)

SECONDARY = new(LibHTS2::BAM_FSECONDARY.to_u16)

SUPPLEMENTARY = new(LibHTS2::BAM_FSUPPLEMENTARY.to_u16)

TABLE = {"paired?": LibHTS2::BAM_FPAIRED, "proper_pair?": LibHTS2::BAM_FPROPER_PAIR, "unmapped?": LibHTS2::BAM_FUNMAP, "mate_unmapped?": LibHTS2::BAM_FMUNMAP, "reverse?": LibHTS2::BAM_FREVERSE, "mate_reverse?": LibHTS2::BAM_FMREVERSE, "read1?": LibHTS2::BAM_FREAD1, "read2?": LibHTS2::BAM_FREAD2, "secondary?": LibHTS2::BAM_FSECONDARY, "qcfail?": LibHTS2::BAM_FQCFAIL, "duplicate?": LibHTS2::BAM_FDUP, "supplementary?": LibHTS2::BAM_FSUPPLEMENTARY}

UNMAP = new(LibHTS2::BAM_FUNMAP.to_u16)

Constructors

• .new(flag_value : UInt16)

Instance Method Summary

• #&(other)
• #<<(other)
• #>>(other)
• #^(other)
• #|(other)
• #~
• #duplicate?
• #has_flag?(m)
• #mate_reverse?
• #mate_unmapped?
• #paired?
• #proper_pair?
• #qcfail?
• #read1?
• #read2?
• #reverse?
• #secondary?
• #supplementary?
• #to_i : UInt16
• #to_s(io : IO)

  Appends a short String representation of this object which includes its class name and its object address.

• #unmapped?
• #value : UInt16

Constructor Detail

Instance Method Detail

class Person
  def initialize(@name : String, @age : Int32)
  end
end

Person.new("John", 32).to_s # => #<Person:0x10a199f20>