class HTS::Bam::Pileup::Alignment

• HTS::Bam::Pileup::Alignment
• Reference
• Object

Overview

Thin wrapper around a single bam_pileup1_t entry. Small fields are copied so they remain valid after the iterator moves on.

Defined in:

hts/bam/pileup.cr

Constructors

• .new(entry : Pointer(LibHTS::BamPileup1T), header : Bam::Header)

Instance Method Summary

• #bitfields : UInt32
• #del? : Bool

  Bitfield helpers

• #head? : Bool
• #indel : Int32
• #query_pos : Int32
• #record : Bam::Record

  Lazily duplicates the underlying bam1_t to avoid copying every read.

• #refskip? : Bool
• #tail? : Bool

Constructor Detail

Instance Method Detail